Ecommerce Shopify WordPress Discussion

WordPress 6 theme creation

I am trying to create a new Wordpress theme and noticed differences of markup between the documentation (at and the default WP themes (e.g. twentytwentyfour). For example, the documentation says that listing a comment is done by calling a php function (e.g. wp_list_comments()), while the themes use HTML-style markup (e.g. <! -- wp:query -- >). Which one is correct and where do I find the documentation for the HTML style code? Also, is the PHP style deprecated or going to be? I tried both styles and both work. I just don't know if the HTML style is documented and is the new way of creating Wordpress themes.
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